First Days Webinar Recording
Day 2
Day 3
Workshop Announcement:
Faculty of Agricultural Sciences University of the Punjab Lahore Pakistan
Hands-on online Workshop on “Genomic Analysis”
Date: 11-13 October 2024
Time: 10:00 AM – 12:00 PM (Pakistan Time)
Get Ready to Analyze!
Welcome to the future of science where we leverage computers to unravel the secrets of our very own DNA! Join us for an engaging online workshop that introduces you to the fascinating realms of computational and genomic analysis. No prior programming knowledge required—just an eagerness to discover!
For Registration informations
https://forms.gle/gDzWDveCdF36Ey6y8
Lecture series
Day1
* Introduction to Linux
* Data formats, Genome Browsers, Genomics Visualization Software
Day2
* Quality Control and Data Processing
* DNA Sequence Alignment
Day3
* RNA -seq Analysis
* De novo transcript assembly
* Variant Calling
What to Expect in the Workshop
In this virtual extravaganza, we’ll cover all the basics of working with genomic data. From understanding sequencing techniques to diving into the nitty-gritty of data processing, our carefully crafted sessions will ensure you’re equipped with the skills to tackle any genomic puzzle. Yes, you too can be a data-whisperer!
Lectures Details
- Introduction to Linux
- Data formats, Genome Browsers, Genomics Visualization Software
- Quality Control and Data Processing
- DNA Sequence Alignment
- RNA -seq Analysis
- De novo transcript assembly
- Variant Calling
Lecture series
Day1
* Introduction to Linux
* Data formats, Genome Browsers, Genomics Visualization Software
Day2
* Quality Control and Data Processing
* DNA Sequence Alignment
Day3
* RNA -seq Analysis
* De novo transcript assembly
* Variant Calling
Why Join Us?
This isn’t just another online lecture where you nod off at your desk. Expect interactivity, liveQ&A sessions, and perhaps even a meme or two about CRISPR! With our witty experts guiding you through the science-coding crossover, you’ll soon find yourself crunching numbers and making discoveries before you can say genomic analysis.
So, if you’re ready to wear your lab coat, grab your virtual headset, and join like-minded individuals craving knowledge, then sign up today! Get ready to unlock the mysteries hidden deep within your own genetic code. We promise—it’ll be a blast!
Basic Knowledge You may have about the workshop
An overview of basic knowledge for genomic analysis:
Genomics Fundamentals:
- DNA structure and function
2. Genomes and gene organization
3. Genetic variation (mutations, SNPs, indels)
4. Gene expression and regulation
Bioinformatics Tools:
1. Sequence alignment (BLAST, MUSCLE)
2. Genome assembly (Velvet, SPAdes)
3. Gene prediction (Glimmer, Augustus)
4. Variant detection (SAMtools, GATK)
Next-Generation Sequencing (NGS):
1. Sequencing technologies (Illumina, PacBio)
2. Data formats (FASTQ, SAM, BAM)
3. Quality control (FastQC, TrimGalore)
4. Read mapping (BWA, Bowtie)
Genomic Analysis Pipelines:
1. Data preprocessing (trimming, filtering)
2. Genome assembly and annotation
3. Variant detection and genotyping
4. Gene expression analysis (RNA-seq)
Computational Skills:
1. Linux command-line interface
2. Programming languages (Python, R, Perl)
3. Data visualization (matplotlib, seaborn)
4. Bioinformatics databases (UCSC, Ensembl)
Key Concepts:
1. Genomic coordinates (chromosomes, contigs)
2. Gene ontology and annotation
3. Sequence alignment and phylogenetics
4. Epigenetics and gene regulation
Recommended Resources:
1. Online courses (Coursera, edX)
2. Tutorials (Bioinformatics for Beginners)
3. Books (Genomics and Bioinformatics)
4. Research articles (Nature, Science)
Basic Software and Tools:
1. BLAST
2. FASTA
3. GenBank
4. RStudio
5. BioPython
6. UCSC Genome Browser
This foundation will provide a solid starting point for learning genomic analysis.
Understanding Strategies to cope with the drought stress: A Seminar at the University of the Punjab
Hosniya Gamal
ي دكتور انا خايفه ادخل مجال البايوانفرمتكس.. لصعبوته وانه ملوش شغل ف مصر اعمل اي؟
Dr Muhammad Shafiq
Subject: Join Our Exciting Bioinformatics Workshop! Dear Hosniya Gamal I hope this message finds you well! I’m excited to share an incredible opportunity in the growing field of bioinformatics. This area is expanding rapidly across the globe, including the Middle East and Africa, and it’s truly the future of science and technology. We invite you to join our hands-on workshop, where you’ll explore the versatile applications of bioinformatics in biological and agricultural sciences. Whether you’re new to the field or looking to deepen your knowledge, this workshop will provide you with valuable insights and practical skills. Don’t miss out on this chance to be part of a transformative experience. We believe you’ll be amazed by what bioinformatics has to offer!
Sumera
Sir i want yo registration in 3 days hands on workshop but registration link is not working kindly help me
Muhammad Shafiq
Please follow this link https://docs.google.com/forms/d/e/1FAIpQLSe0QUsS97pjt1qY2QjbzQ6PXeT4fue_ITSiXHqmXDfWRnjzSQ/viewform?pli=1 for further information please contact 00923006561997
Muhammad Shafiq
DEAR Bioinformatics is easy and has huge applications and jobs workdwide
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